If you prefer the terminal, checkout my new CV at terminal.vieira.io (you can just ssh into it with user bruno)
Interested in Machine Learning, Genomics, Open Science and the Web.
Scientist by education and programmer by profession. Over the years, I've coded mostly in Node.js (JavaScript), Python, R, and Shell scripting to analyse Big Genomic Data.
Founded and lead Bionode.io, an Open Source community to build scalable code and tools for bioinformatics by leveraging Node.js.
In 2016, the Mozilla Science Lab awarded me a fellowship (one of four, out of 483 submissions) to travel around the world and champion open science through workshops and hackathons.
Reproducibility and scalability are important to me, thus I've also become an expert in Docker, Singularity, Nix (package manager) and cloud computing.
Worked for research labs and startups, I enjoy being at the intersection of industry and academia.
For more information, have a look at my curriculum vitae .
Blazing fast Neovim framework providing solid defaults and a beautiful UI, enhancing your neovim experience.
Demo GithubSimple test Nextflow pipeline for testing GPU capabilities with cloud systems such as AWS Batch
GithubRNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
Demo GithubFor QMUL's Genome Bioinformatics MSc module BIO721P & SIB's Spring school in bioinfo & population genomics
Demo GithubThe go-to place for materials, contributions and work for the 2016 Mozilla Fellows for Science.
Github:bangbang: :page_facing_up: :mag: an API and web interface to check if a paper has been retracted
Demo GithubTransform stream for Node.js that allows you to run your transforms in parallel without changing the order
GithubTalk about the PSMC, given in the Evolution Group Lab Jolly at the Queen Mary, University of London.
GithubProvides access to complex Bioinformatics software (even BioLinux!) in just one command.
GithubSmall talk given at the outreach event for the Population Genetics Group 2015 meeting
Demo GithubConverts XML to JSON, using Streams and sax. This can be used with above-memory-limits XML files, as long as they're mostly composed of a repetitive tag.
GithubDockerfile for Trusted Build of the image with the Afra project dependencies
GithubLightning talk (2 min) for the Collaborations Workshop 2014 at the Software Sustainability Institute
GithubYou can reach me via the channels below.